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1

Patterns and ecological drivers of ocean viral communities

Brum, J. R., Ignacio-Espinoza, J. C., Roux, S., Doulcier, G., Acinas, S. G., Alberti, A., Chaffron, S., Cruaud, C., de Vargas, C., Gasol, J. M., Gorsky, G., Gregory, A. C., Guidi, L., Hingamp, P., Iud

Journal:

Year:

2015

Language:

english

File:

PDF, 3.11 MB

english, 2015

2

The global virome: not as big as we thought?

Cesar Ignacio-Espinoza, J, Solonenko, Sergei A., Sullivan, Matthew B

Journal:

Current Opinion in Virology

Year:

2013

Language:

english

File:

PDF, 993 KB

english, 2013

3

Closing the gaps on the viral photosystem-I psaDCAB gene organization

Roitman, Sheila, Flores-Uribe, José, Philosof, Alon, Knowles, Ben, Rohwer, Forest, Ignacio-Espinoza, J. Cesar, Sullivan, Matthew B., Cornejo-Castillo, Francisco M., Sánchez, Pablo, Acinas, Silvia G.,

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 936 KB

english, 2015

4

Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

Lara, Elena, Holmfeldt, Karin, Solonenko, Natalie, Sà, Elisabet Laia, Ignacio-Espinoza, J. Cesar, Cornejo-Castillo, Francisco M., Verberkmoes, Nathan C., Vaqué, Dolors, Sullivan, Matthew B., Acinas, S

Journal:

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

5

Illuminating structural proteins in viral “dark matter” with metaproteomics

Brum, Jennifer R., Ignacio-Espinoza, J. Cesar, Kim, Eun-Hae, Trubl, Gareth, Jones, Robert M., Roux, Simon, VerBerkmoes, Nathan C., Rich, Virginia I., Sullivan, Matthew B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016

6

Phylogenomics of T4 cyanophages: lateral gene transfer in the ‘core’ and origins of host genes

J. Cesar Ignacio-Espinoza, Matthew B. Sullivan

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 993 KB

english, 2012

7

Long-term stability and Red Queen-like strain dynamics in marine viruses

Ignacio-Espinoza, J. Cesar, Ahlgren, Nathan A., Fuhrman, Jed A.

Journal:

Nature Microbiology

Year:

2019

File:

PDF, 6.03 MB

2019

8

A non-tailed twist in the viral tale

Ignacio-Espinoza, Julio Cesar, Fuhrman, Jed A.

Journal:

Year:

2018

Language:

english

File:

PDF, 387 KB

english, 2018

9

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer

Gregory, Ann C., Solonenko, Sergei A., Ignacio-Espinoza, J. Cesar, LaButti, Kurt, Copeland, Alex, Sudek, Sebastian, Maitland, Ashley, Chittick, Lauren, dos Santos, Filipa, Weitz, Joshua S., Worden, Al

Journal:

Year:

2016

Language:

english

File:

PDF, 2.88 MB

english, 2016

10

Sequencing platform and library preparation choices impact viral metagenomes

Sergei A Solonenko, J César Ignacio-Espinoza, Adriana Alberti…

Journal:

Year:

2013

Language:

english

File:

PDF, 361 KB

english, 2013

11

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

Matthew B. Sullivan, Katherine H. Huang, Julio C. Ignacio-Espinoza, Aaron M. Berlin, Libusha Kelly, Peter R. Weigele, Alicia S. DeFrancesco, Suzanne E. Kern, Luke R. Thompson, Sarah Young, Chandri Yan

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 1.70 MB

english, 2010

12

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

Deng, Li, Ignacio-Espinoza, J. Cesar, Gregory, Ann C., Poulos, Bonnie T., Weitz, Joshua S., Hugenholtz, Philip, Sullivan, Matthew B.

Journal:

Year:

2014

Language:

english

File:

PDF, 9.76 MB

english, 2014

13

A network-based integrated framework for predicting virusâprokaryote interactions

Wang, Weili, Ren, Jie, Tang, Kujin, Dart, Emily, Ignacio-Espinoza, Julio Cesar, Fuhrman, JedÂ A, Braun, Jonathan, Sun, Fengzhu, Ahlgren, Nathan A

Journal:

NAR Genomics and Bioinformatics

Year:

2020

File:

PDF, 619 KB

2020

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